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Abstract Methane (CH₄) emissions from wetland ecosystems are controlled by redox conditions in the soil, which are currently underrepresented in Earth system models. Plant-mediated radial oxygen loss (ROL) can increase soil O₂availability, affect local redox conditions, and cause heterogeneous distribution of redox-sensitive chemical species at the root scale, which would affect CH₄emissions integrated over larger scales. In this study, we used a subsurface geochemical simulator (PFLOTRAN) to quantify the effects of incorporating either spatially homogeneous ROL or more complex heterogeneous ROL on model predictions of porewater solute concentration depth profiles (dissolved organic carbon, methane, sulfate, sulfide) and column integrated CH₄fluxes for a tidal coastal wetland. From the heterogeneous ROL simulation, we obtained 18% higher column averaged CH₄concentration at the rooting zone but 5% lower total CH₄flux compared to simulations of the homogeneous ROL or without ROL. This difference is because lower CH₄concentrations occurred in the same rhizosphere volume that was directly connected with plant-mediated transport of CH₄from the rooting zone to the atmosphere. Sensitivity analysis indicated that the impacts of heterogeneous ROL on model predictions of porewater oxygen and sulfide concentrations will be more important under conditions of higher ROL fluxes or more heterogeneous root distribution (lower root densities). Despite the small impact on predicted CH₄emissions, the simulated ROL drastically reduced porewater concentrations of sulfide, an effective phytotoxin, indicating that incorporating ROL combined with sulfur cycling into ecosystem models could potentially improve predictions of plant productivity in coastal wetland ecosystems. 

Oxidized iron (Fe) can reduce seagrass dieback when present in sufficient quantities in the sediment to fix sulfide as pyrite (FeS₂) or iron monosulfide (FeS). However, the oxidized Fe pool may become depleted over time as Fe is reduced and precipitated with sulfides. In this study, we estimated long-term variations in the speciation of solid forms of reduced and oxidized Fe along a eutrophication gradient in West Falmouth Harbor (WFH) (a temperate lagoon with substantial seagrass meadows) and conducted a 6-week microcosm study to assess the role of oxidized Fe in supporting seagrass recovery. We planted seagrass in sediments obtained from 2 WFH regions with differing Fe speciation. We found depletion of oxidized Fe over a decade following a seagrass dieback, even when the soluble sulfide levels decreased to concentrations unlikely to cause toxicity in seagrass. The continued absence of large concentrations of available oxidized Fe minerals in sediments, where most Fe was bound in FeS₂, could impede the recovery of seagrass in formerly vegetated regions. Seagrass grown in sediments with low Fe:S ratios exhibited an increased probability of survival after 4 weeks. Field and laboratory results indicated that even when the soluble sulfide levels decrease after seagrass dieback, sediments may not be able to support seagrass recovery due to the legacy effects of eutrophication on the sediment Fe pool. However, we observed signs of reoxidation in the Fe pool within a few years of seagrass dieback, including a decrease in the total sediment S concentration, which could help spur recolonization. 

Salt marshes sit at the terrestrial–aquatic interface of oceans around the world. Unique features of salt marshes that differentiate them from their upland or offshore counterparts include high rates of primary production from vascular plants and saturated saline soils that lead to sharp redox gradients and a diversity of electron acceptors and donors. Moreover, the dynamic nature of root oxygen loss and tidal forcing leads to unique biogeochemical conditions that promote nitrogen cycling. Here, we highlight recent advances in our understanding of key nitrogen cycling processes in salt marshes and discuss areas where additional research is needed to better predict how salt marsh N cycling will respond to future environmental change. 

Abstract As part of a long-term study on the effects of nitrogen (N) loading in a shallow temperate lagoon, we measured rates of N₂fixation associated with seagrass (Zostera marina) epiphytes during the summer from 2005 to 2019, at two sites along a gradient from where high N groundwater enters the system (denoted SH) to a more well-flushed outer harbor (OH). The data presented here are the first such long-term N₂fixation estimates for any seagrass system and one of the very few reported for the phyllosphere in a temperate system. Mean daily N₂fixation was estimated from light and dark measurements using the acetylene reduction assay intercalibrated using both incorporation of¹⁵N₂into biomass and a novel application of the N₂:Ar method. Surprisingly, despite a large inorganic N input from a N-contaminated groundwater plume, epiphytic N₂fixation rates were moderately to very high for a seagrass system (OH site 14-year mean of 0.94 mmol N m⁻² d⁻¹), with the highest rates (2.6 mmol N m⁻² d⁻¹) measured at the more N-loaded eutrophic site (SH) where dissolved inorganic N was higher and soluble reactive phosphorus was lower than in the better-flushed OH. Over 95% of the total N₂fixation measured was in the light, suggesting the importance of cyanobacteria in the epiphyte assemblages. We observed large inter-annual variation both within and across the two study sites (range from 0.1 to 2.6 mmol N fixed m⁻²d⁻¹), which we suggest is in part related to climatic variation. We estimate that input from phyllosphere N₂fixation over the study period contributes on average an additional 20% to the total daily N load per area within the seagrass meadow. 

ABSTRACT Sulfur-cycling microbial communities in salt marsh rhizosphere sediments mediate a recycling and detoxification system central to plant productivity. Despite the importance of sulfur-cycling microbes, their biogeographic, phylogenetic, and functional diversity remain poorly understood. Here, we use metagenomic data sets from Massachusetts (MA) and Alabama (AL) salt marshes to examine the distribution and genomic diversity of sulfur-cycling plant-associated microbes. Samples were collected from sediments underSporobolus alterniflorusandSporobolus pumilusin separate MA vegetation zones, and underS. alterniflorusandJuncus roemerianusco-occuring in AL. We grouped metagenomic data by plant species and site and identified 38 MAGs that included pathways for sulfate reduction or sulfur oxidation. Phylogenetic analyses indicated that 29 of the 38 were affiliated with uncultivated lineages. We showed differentiation in the distribution of MAGs between AL and MA, betweenS. alterniflorusandS. pumilusvegetation zones in MA, but no differentiation betweenS. alterniflorusandJ. roemerianusin AL. Pangenomic analyses of eight ubiquitous MAGs also detected site- and vegetation-specific genomic features, including varied sulfur-cycling operons, carbon fixation pathways, fixed single-nucleotide variants, and active diversity-generating retroelements. This genetic diversity, detected at multiple scales, suggests evolutionary relationships affected by distance and local environment, and demonstrates differential microbial capacities for sulfur and carbon cycling in salt marsh sediments. IMPORTANCESalt marshes are known for their significant carbon storage capacity, and sulfur cycling is closely linked with the ecosystem-scale carbon cycling in these ecosystems. Sulfate reducers are key for the decomposition of organic matter, and sulfur oxidizers remove toxic sulfide, supporting the productivity of marsh plants. To date, the complexity of coastal environments, heterogeneity of the rhizosphere, high microbial diversity, and uncultured majority hindered our understanding of the genomic diversity of sulfur-cycling microbes in salt marshes. Here, we use comparative genomics to overcome these challenges and provide an in-depth characterization of sulfur-cycling microbial diversity in salt marshes. We characterize communities across distinct sites and plant species and uncover extensive genomic diversity at the taxon level and specific genomic features present in MAGs affiliated with uncultivated sulfur-cycling lineages. Our work provides insights into the partnerships in salt marshes and a roadmap for multiscale analyses of diversity in complex biological systems. 

Abstract Excess reactive nitrogen (N) flows from agricultural, suburban, and urban systems to coasts, where it causes eutrophication. Coastal wetlands take up some of this N, thereby ameliorating the impacts on nearshore waters. Although the consequences of N on coastal wetlands have been extensively studied, the effect of the specific form of N is not often considered. Both oxidized N forms (nitrate, NO3−) and reduced forms (ammonium, NH4+) can relieve nutrient limitation and increase primary production. However, unlike NH4+, NO3− can also be used as an electron acceptor for microbial respiration. We present results demonstrating that, in salt marshes, microbes use NO3− to support organic matter decomposition and primary production is less stimulated than when enriched with reduced N. Understanding how different forms of N mediate the balance between primary production and decomposition is essential for managing coastal wetlands as N enrichment and sea level rise continue to assail our coasts.